Journal of Medicinal Chemistry Table of Contents: 2009, vol. 52, No. 14


Perspectives

The pKBHX Database: Toward a Better Understanding of Hydrogen-Bond Basicity for Medicinal Chemists
Christian Laurence, Ken A. Brameld, Jerome Graton, Jean-Yves Le Questel and Eric Renault
4073-4086

Full: PDF (2172 K)

Letters

Virtual Screening Approach for the Identification of New Rac1 Inhibitors
Nicola Ferri, Alberto Corsini, Paolo Bottino, Francesca Clerici and Alessandro Contini
4087-4090

Full: PDF (2181 K)
Identification of an Orally Active Opioid Receptor-like 1 (ORL1) Receptor Antagonist 4-{3-[(2R)-2,3-Dihydroxypropyl]-2-oxo-2,3-dihydro-1H-benzimidazol-1-yl}-1-[(1S,3S,4R)-spiro[bicyclo[2.2.1]heptane-2,1′-cyclopropan]-3-ylmethyl]piperidine as Clinical Candidate
Atsushi Satoh, Takeshi Sagara, Hiroki Sakoh, Masaya Hashimoto, Hiroshi Nakashima, Tetsuya Kato, Yasuhiro Goto, Sayaka Mizutani, Tomoko Azuma-Kanoh, Takeshi Tani, Shoki Okuda, Osamu Okamoto, Satoshi Ozaki, Yoshikazu Iwasawa, Hisashi Ohta and Hiroshi Kawamoto
4091-4094

Full: PDF (846 K)
Site-Activated Multifunctional Chelator with Acetylcholinesterase and Neuroprotective−Neurorestorative Moieties for Alzheimer’s Therapy
Hailin Zheng, Moussa B. H. Youdim and Mati Fridkin
4095-4098

Full: PDF (823 K)
Structure-Based Design of a Benzodiazepine Scaffold Yields a Potent Allosteric Inhibitor of Hepatitis C NS5B RNA Polymerase
Koen Vandyck, Maxwell D. Cummings, Origene Nyanguile, Carlo W. Boutton, Sandrine Vendeville, David McGowan, Benoit Devogelaere, Katie Amssoms, Stefaan Last, Klara Rombauts, Abdellah Tahri, Pedro Lory, Lili Hu, Derek A. Beauchamp, Kenny Simmen and Pierre Raboisson
4099-4102

Full: PDF (2162 K)
Discovery of Molecular Switches That Modulate Modes of Metabotropic Glutamate Receptor Subtype 5 (mGlu5) Pharmacology in Vitro and in Vivo within a Series of Functionalized, Regioisomeric 2- and 5-(Phenylethynyl)pyrimidines
Sameer Sharma, Jeffrey Kedrowski, Jerri M. Rook, Randy L. Smith, Carrie K. Jones, Alice L. Rodriguez, P. Jeffrey Conn and Craig W. Lindsley
4103-4106

Full: PDF (1112 K)
Trisulfonated Porphyrazines: New Photosensitizers for the Treatment of Retinal and Subretinal Edema
Johan E. van Lier, Hongjian Tian, Hasrat Ali, Nicole Cauchon and Haroutioun M. Hassessian
4107-4110

Full: PDF (919 K)
Synthesis and Biological Evaluation of a Novel 3-Sulfonyl-8-azabicyclo[3.2.1]octane Class of Long Chain Fatty Acid Elongase 6 (ELOVL6) Inhibitors
Tsuyoshi Nagase, Toshiyuki Takahashi, Takahide Sasaki, Akira Nagumo, Ken Shimamura, Yasuhisa Miyamoto, Hidefumi Kitazawa, Maki Kanesaka, Ryo Yoshimoto, Katsumi Aragane, Shigeru Tokita and Nagaaki Sato
4111-4114

Full: PDF (823 K)
Synthesis and Evaluation of a Series of Heterobiarylamides That Are Centrally Penetrant Metabotropic Glutamate Receptor 4 (mGluR4) Positive Allosteric Modulators (PAMs)
Darren W. Engers, Colleen M. Niswender, C. David Weaver, Satyawan Jadhav, Usha N. Menon, Rocio Zamorano, P. Jeffrey Conn, Craig W. Lindsley and Corey R. Hopkins
4115-4118

Full: PDF (818 K)

Articles

The Immobilization of Gossypol Derivative on N-Polyvinylpyrrolidone Increases its Water Solubility and Modifies Membrane-Active Properties
Maksim Ionov, Nataliya Gordiyenko, Ewa Olchowik, Nina Baram, Khairulla Zijaev, Bakhtiyar Salakhutdinov, Maria Bryszewska and Maria Zamaraeva
4119-4125

Full: PDF (834 K)
Octahydropyrrolo[3,4-c]pyrrole: A Diamine Scaffold for Construction of Either α4β2 or α7-Selective Nicotinic Acetylcholine Receptor (nAChR) Ligands. Substitutions that Switch Subtype Selectivity
William H. Bunnelle, Karin R. Tietje, Jennifer M. Frost, Dan Peters, Jianguo Ji, Tao Li, Marc J. C. Scanio, Lei Shi, David J. Anderson, Tino Dyhring, Jens H. Grønlien, Hilde Ween, Kirsten Thorin-Hagene and Michael D. Meyer
4126-4141

Full: PDF (1208 K)
The First Bioreversible Prodrug of Metformin with Improved Lipophilicity and Enhanced Intestinal Absorption
Kristiina M. Huttunen, Anne Mannila, Krista Laine, Eeva Kemppainen, Jukka Leppanen, Jouko Vepsalainen, Tomi Jarvinen and Jarkko Rautio
4142-4148

Full: PDF (776 K)
Na+ Currents in Cardioprotection: Better to Be Late
Bruno Le Grand, Christophe Pignier, Robert Letienne, Francis Colpaert, Florence Cuisiat, Francoise Rolland, Agnes Mas, Maud Borras and Bernard Vacher
4149-4160

Full: PDF (1114 K)
In Vitro Intrinsic Clearance-Based Optimization of N3-Phenylpyrazinones as Corticotropin-Releasing Factor-1 (CRF1) Receptor Antagonists
Richard A. Hartz, Vijay T. Ahuja, Maria Rafalski, William D. Schmitz, Allison B. Brenner, Derek J. Denhart, Jonathan L. Ditta, Jeffrey A. Deskus, Eddy W. Yue, Argyrios G. Arvanitis, Snjezana Lelas, Yu-Wen Li, Thaddeus F. Molski, Harvey Wong, James E. Grace, Kimberley A. Lentz, Jianqing Li, Nicholas J. Lodge, Robert Zaczek, Andrew P. Combs, Richard E. Olson, Ronald J. Mattson, Joanne J. Bronson and John E. Macor
4161-4172

Full: PDF (1065 K)
Synthesis, Structure−Activity Relationships, and In Vivo Evaluation of N3-Phenylpyrazinones as Novel Corticotropin-Releasing Factor-1 (CRF1) Receptor Antagonists
Richard A. Hartz, Vijay T. Ahuja, Argyrios G. Arvanitis, Maria Rafalski, Eddy W. Yue, Derek J. Denhart, William D. Schmitz, Jonathan L. Ditta, Jeffrey A. Deskus, Allison B. Brenner, Frank W. Hobbs, Joseph Payne, Snjezana Lelas, Yu-Wen Li, Thaddeus F. Molski, Gail K. Mattson, Yong Peng, Harvey Wong, James E. Grace, Kimberley A. Lentz, Jingfang Qian-Cutrone, Xiaoliang Zhuo, Yue-Zhong Shu, Nicholas J. Lodge, Robert Zaczek, Andrew P. Combs, Richard E. Olson, Joanne J. Bronson, Ronald J. Mattson and John E. Macor
4173-4191

Full: PDF (1274 K)
Design, Synthesis, Biological Evaluation, and Structure−Activity Relationship (SAR) Discussion of Dipeptidyl Boronate Proteasome Inhibitors, Part I: Comprehensive Understanding of the SAR of α-Amino Acid Boronates
Yongqiang Zhu, Xin Zhao, Xinrong Zhu, Gang Wu, Yuejie Li, Yuheng Ma, Yunxia Yuan, Jie Yang, Yang Hu, Li Ai and Qingzhi Gao
4192-4199

Full: PDF (1218 K)
Novel Lead Structures for p38 MAP Kinase via FieldScreen Virtual Screening
Timothy J. Cheeseright, Melanie Holm, Frank Lehmann, Sabine Luik, Marcia Gottert, James L. Melville and Stefan Laufer
4200-4209

Full: PDF (3791 K)
Discovery of Geranylgeranyltransferase-I Inhibitors with Novel Scaffolds by the Means of Quantitative Structure−Activity Relationship Modeling, Virtual Screening, and Experimental Validation
Yuri K. Peterson, Xiang S. Wang, Patrick J. Casey and Alexander Tropsha
4210-4220

Full: PDF (1778 K)
Generation of Ligand-Based Pharmacophore Model and Virtual Screening for Identification of Novel Tubulin Inhibitors with Potent Anticancer Activity
Yi-Kun Chiang, Ching-Chuan Kuo, Yu-Shan Wu, Chung-Tong Chen, Mohane Selvaraj Coumar, Jian-Sung Wu, Hsing-Pang Hsieh, Chi-Yen Chang, Huan-Yi Jseng, Ming-Hsine Wu, Jiun-Shyang Leou, Jen-Shin Song, Jang-Yang Chang, Ping-Chiang Lyu, Yu-Sheng Chao and Su-Ying Wu
4221-4233

Full: PDF (4562 K)
Structural Assessment and Biological Evaluation of Two N3S Bombesin Derivatives
Eleni Gourni, Penelope Bouziotis, Dimitra Benaki, George Loudos, Stavros Xanthopoulos, Maria Paravatou-Petsotas, Maria Mavri-Vavagianni, Maria Pelecanou, Spyros C. Archimandritis and Alexandra D. Varvarigou
4234-4246

Full: PDF (2761 K)
Inhibition of Influenza Virus Infections by Sialylgalactose-Binding Peptides Selected from a Phage Library
Teruhiko Matsubara, Machiko Sumi, Hiroyuki Kubota, Takao Taki, Yoshio Okahata and Toshinori Sato
4247-4256

Full: PDF (4446 K)
A Small-Molecule Inhibitor of Nipah Virus Envelope Protein-Mediated Membrane Fusion
Sabine Niedermeier, Katrin Singethan, Sebastian G. Rohrer, Magnus Matz, Markus Kossner, Sandra Diederich, Andrea Maisner, Jens Schmitz, Georg Hiltensperger, Knut Baumann, Ulrike Holzgrabe and Jurgen Schneider-Schaulies
4257-4265

Full: PDF (3396 K)
Side Chain Flexibilities in the Human Ether-a-go-go Related Gene Potassium Channel (hERG) Together with Matched-Pair Binding Studies Suggest a New Binding Mode for Channel Blockers
Ulrich Zachariae, Fabrizio Giordanetto and Andrew G. Leach
4266-4276

Full: PDF (7188 K)
Structure−Activity Relationships and Cancer-Cell Selective Toxicity of Novel Inhibitors of Glioma-Associated Oncogene Homologue 1 (Gli1) Mediated Transcription
Neeraj Mahindroo, Michele C. Connelly, Chandanamali Punchihewa, Hiromichi Kimura, Matthew P. Smeltzer, Song Wu and Naoaki Fujii
4277-4287

Full: PDF (1698 K)
Discovery of Novel 2-Aminobenzamide Inhibitors of Heat Shock Protein 90 as Potent, Selective and Orally Active Antitumor Agents
Kenneth H. Huang, James M. Veal, R. Patrick Fadden, John W. Rice, Jeron Eaves, Jon-Paul Strachan, Amy F. Barabasz, Briana E. Foley, Thomas E. Barta, Wei Ma, Melanie A. Silinski, Mei Hu, Jeffrey M. Partridge, Anisa Scott, Laura G. DuBois, Tiffany Freed, Paul M. Steed, Andy J. Ommen, Emilie D. Smith, Philip F. Hughes, Angela R. Woodward, Gunnar J. Hanson, W. Stephen McCall, Christopher J. Markworth, Lindsay Hinkley, Matthew Jenks, Lifeng Geng, Meredith Lewis, James Otto, Bert Pronk, Katleen Verleysen and Steven E. Hall
4288-4305

Full: PDF (1803 K)
Conjugation of 2-(1′-Hexyloxyethyl)-2-devinylpyropheophorbide-a (HPPH) to Carbohydrates Changes its Subcellular Distribution and Enhances Photodynamic Activity in Vivo
Xiang Zheng, Janet Morgan, Suresh K. Pandey, Yihui Chen, Erin Tracy, Heinz Baumann, Joseph R. Missert, Carrie Batt, Jennifer Jackson, David A. Bellnier, Barbara W. Henderson and Ravindra K. Pandey
4306-4318

Full: PDF (4238 K)
Is Glutathione the Major Cellular Target of Cisplatin? A Study of the Interactions of Cisplatin with Cancer Cell Extracts
Yonit Kasherman, Stefan Sturup and Dan Gibson
4319-4328

Full: PDF (1155 K)
Chemical and Biological Investigation of Cyclopropyl Containing Diaryl-pyrazole-3-carboxamides as Novel and Potent Cannabinoid Type 1 Receptor Antagonists
Gyorgy Szabo, Balazs Varga, Dora Payer-Lengyel, Attila Szemzo, Peter Erdelyi, Krisztina Vukics, Judit Szikra, Eva Hegyi, Monika Vastag, Bela Kiss, Judit Laszy, Istvan Gyertyan and Janos Fischer
4329-4337

Full: PDF (1430 K)
The Role of Amphiphilicity and Negative Charge in Glycoprotein 41 Interactions in the Hydrophobic Pocket
Miriam Gochin and Lifeng Cai
4338-4344

Full: PDF (1841 K)
Synthesis, Binding, and Modeling Studies of New Cytisine Derivatives, as Ligands for Neuronal Nicotinic Acetylcholine Receptor Subtypes
Bruno Tasso, Caterina Canu Boido, Emanuela Terranova, Cecilia Gotti, Loredana Riganti, Francesco Clementi, Roberto Artali, Gabriella Bombieri, Fiorella Meneghetti and Fabio Sparatore
4345-4357

Full: PDF (4544 K)
Potential Neuroprotective Drugs in Cerebral Ischemia: New Saturated and Polyunsaturated Lipids Coupled to Hydrophilic Moieties: Synthesis and Biological Activity
Alain Cesar Biraboneye, Sebastien Madonna, Younes Laras, Slavica Krantic, Pamela Maher and Jean-Louis Kraus
4358-4369

Full: PDF (2274 K)
Novel Small Molecule Bradykinin B2 Receptor Antagonists
Christoph Gibson, Karsten Schnatbaum, Jochen R. Pfeifer, Elsa Locardi, Matthias Paschke, Ulf Reimer, Uwe Richter, Dirk Scharn, Alexander Faussner and Thomas Tradler
4370-4379

Full: PDF (1430 K)
Cell Division Cycle 7 Kinase Inhibitors: 1H-Pyrrolo[2,3-b]pyridines, Synthesis and Structure−Activity Relationships
Antonella Ermoli, Alberto Bargiotti, Maria Gabriella Brasca, Antonella Ciavolella, Nicoletta Colombo, Gabriele Fachin, Antonella Isacchi, Maria Menichincheri, Antonio Molinari, Alessia Montagnoli, Antonio Pillan, Sonia Rainoldi, Federico Riccardi Sirtori, Francesco Sola, Sandrine Thieffine, Marcellino Tibolla, Barbara Valsasina, Daniele Volpi, Corrado Santocanale and Ermes Vanotti
4380-4390

Full: PDF (1697 K)
Inhibition of Hypoxanthine-Guanine Phosphoribosyltransferase by Acyclic Nucleoside Phosphonates: A New Class of Antimalarial Therapeutics
Dianne T. Keough, Dana Hockova, Antonin Holy, Lieve M. J. Naesens, Tina S. Skinner-Adams, John de Jersey and Luke W. Guddat
4391-4399

Full: PDF (3240 K)
Discovery of a Potent and Orally Active Hedgehog Pathway Antagonist (IPI-926)
Martin R. Tremblay, Andre Lescarbeau, Michael J. Grogan, Eddy Tan, Grace Lin, Brian C. Austad, Lin-Chen Yu, Mark L. Behnke, Somarajan J. Nair, Margit Hagel, Kerry White, James Conley, Joseph D. Manna, Teresa M. Alvarez-Diez, Jennifer Hoyt, Caroline N. Woodward, Jens R. Sydor, Melissa Pink, John MacDougall, Matthew J. Campbell, Jill Cushing, Jeanne Ferguson, Michael S. Curtis, Karen McGovern, Margaret A. Read, Vito J. Palombella, Julian Adams and Alfredo C. Castro
4400-4418

Full: PDF (2805 K)
Identification of Peptide Substrate and Small Molecule Inhibitors of Testis-Specific Serine/Threonine Kinase1 (TSSK1) By the Developed Assays
Leilei Zhang, Yu Yan, Zijie Liu, Zeper Abliz and Gang Liu
4419-4428

Full: PDF (1292 K)
Definition of the G Protein-Coupled Receptor Transmembrane Bundle Binding Pocket and Calculation of Receptor Similarities for Drug Design
David E. Gloriam, Steven M. Foord, Frank E. Blaney and Stephen L. Garland
4429-4442

Full: PDF (5921 K)
Discovery of a Peroxisome Proliferator Activated Receptor γ (PPARγ) Modulator with Balanced PPARα Activity for the Treatment of Type 2 Diabetes and Dyslipidemia
Weiguo Liu, Kun Liu, Harold B. Wood, Margaret E. McCann, Thomas W. Doebber, Ching H. Chang, Taro E. Akiyama, Monica Einstein, Joel P. Berger and Peter T. Meinke
4443-4453

Full: PDF (1045 K)
One Scaffold, Three Binding Modes: Novel and Selective Pteridine Reductase 1 Inhibitors Derived from Fragment Hits Discovered by Virtual Screening
Chidochangu P. Mpamhanga, Daniel Spinks, Lindsay B. Tulloch, Emma J. Shanks, David A. Robinson, Iain T. Collie, Alan H. Fairlamb, Paul G. Wyatt, Julie A. Frearson, William N. Hunter, Ian H. Gilbert and Ruth Brenk
4454-4465

Full: PDF (3781 K)
Design, Synthesis, and Evaluation of Indolinones as Triple Angiokinase Inhibitors and the Discovery of a Highly Specific 6-Methoxycarbonyl-Substituted Indolinone (BIBF 1120)
Gerald J. Roth, Armin Heckel, Florian Colbatzky, Sandra Handschuh, Jorg Kley, Thorsten Lehmann-Lintz, Ralf Lotz, Ulrike Tontsch-Grunt, Rainer Walter and Frank Hilberg
4466-4480

Full: PDF (1874 K)
Heterobiaryl Human Immunodeficiency Virus Entry Inhibitors
Rong-Jian Lu, John A. Tucker, Jason Pickens, You-An Ma, Tatiana Zinevitch, Olga Kirichenko, Vitalii Konoplev, Svetlana Kuznetsova, Sergey Sviridov, Enugurthi Brahmachary, Alisher Khasanov, Charles Mikel, Yang Yang, Changhui Liu, Jian Wang, Stephanie Freel, Shelly Fisher, Alana Sullivan, Jiying Zhou, Sherry Stanfield-Oakley, Brian Baker, Jeff Sailstad, Michael Greenberg, Dani Bolognesi, Brian Bray, Barney Koszalka, Peter Jeffs, Cynthia Jeffries, Alexander Chucholowski and Connie Sexton
4481-4487

Full: PDF (1133 K)
In Silico Prediction of Volume of Distribution in Human Using Linear and Nonlinear Models on a 669 Compound Data Set
Giuliano Berellini, Clayton Springer, Nigel J. Waters and Franco Lombardo
4488-4495

Full: PDF (2065 K)
Discovery of 2-[5-(4-Chloro-phenyl)-1-(2,4-dichloro-phenyl)-4-ethyl-1H-pyrazol-3-yl]-1,5,5-trimethyl-1,5-dihydro-imidazol-4-thione (BPR-890) via an Active Metabolite. A Novel, Potent and Selective Cannabinoid-1 Receptor Inverse Agonist with High Antiobesity Efficacy in DIO Mice
Chien-Huang Wu, Ming-Shiu Hung, Jen-Shin Song, Teng-Kuang Yeh, Ming-Chen Chou, Cheng-Ming Chu, Jiing-Jyh Jan, Min-Tsang Hsieh, Shi-Liang Tseng, Chun-Ping Chang, Wan-Ping Hsieh, Yinchiu Lin, Yen-Nan Yeh, Wan-Ling Chung, Chun-Wei Kuo, Chin-Yu Lin, Horng-Shing Shy, Yu-Sheng Chao and Kak-Shan Shia
4496-4510

Full: PDF (2146 K)
Apogossypol Derivatives as Pan-Active Inhibitors of Antiapoptotic B-Cell Lymphoma/Leukemia-2 (Bcl-2) Family Proteins
Jun Wei, Shinichi Kitada, Michele F. Rega, John L. Stebbins, Dayong Zhai, Jason Cellitti, Hongbin Yuan, Aras Emdadi, Russell Dahl, Ziming Zhang, Li Yang, John C. Reed and Maurizio Pellecchia
4511-4523

Full: PDF (3508 K)
Synthesis and Preclinical Evaluation of Novel PET Probes for P-Glycoprotein Function and Expression
Aren van Waarde, Nisha K. Ramakrishnan, Anna A. Rybczynska, Philip H. Elsinga, Francesco Berardi, Johan R. de Jong, Chantal Kwizera, Roberto Perrone, Mariangela Cantore, Jurgen W. A. Sijbesma, Rudi A. Dierckx and Nicola A. Colabufo
4524-4532

Full: PDF (2318 K)

Brief Articles

L337H Mutant of Rat Neuronal Nitric Oxide Synthase Resembles Human Neuronal Nitric Oxide Synthase toward Inhibitors
Jianguo Fang, Haitao Ji, Graham R. Lawton, Fengtian Xue, Linda J. Roman and Richard B. Silverman
4533-4537

Full: PDF (1315 K)
Isocombretastatins A versus Combretastatins A: The Forgotten isoCA-4 Isomer as a Highly Promising Cytotoxic and Antitubulin Agent
Samir Messaoudi, Bret Treguier, Abdallah Hamze, Olivier Provot, Jean-Francois Peyrat, Jordi Rodrigo De Losada, Jian-Miao Liu, Jerome Bignon, Joanna Wdzieczak-Bakala, Sylviane Thoret, Joelle Dubois, Jean-Daniel Brion and Mouad Alami
4538-4542

Full: PDF (2840 K)
Allosteric Modulators of the Adenosine A1 Receptor: Synthesis and Pharmacological Evaluation of 4-Substituted 2-Amino-3-benzoylthiophenes
Luigi Aurelio, Celine Valant, Bernard L. Flynn, Patrick M. Sexton, Arthur Christopoulos and Peter J. Scammells
4543-4547

Full: PDF (864 K)

Book Reviews

Theilheimer’s Synthetic Methods of Organic Chemistry. Volume 73
Jonathan L. Vennerstrom
4548-4548
Full: PDF (558 K)
Book Review of The Cannabinoid Receptors
Kennerly S. Patrick
4548-4548
Full: PDF (558 K)

Additions and Corrections

Corrections to Rational Modification of a Candidate Cancer Drug for Use against Chagas Disease
James M. Kraus, Christophe L. M. J. Verlinde, Mandana Karimi, Galina I. Lepesheva, Michael H. Gelb and Frederick S. Buckner
4549-4549
Full: PDF (543 K)
Corrections to Large-Scale Application of High-Throughput Molecular Mechanics with Poisson−Boltzmann Surface Area for Routine Physics-Based Scoring of Protein−Ligand Complexes
Scott P. Brown and Steven W. Muchmore
4549-4549
Full: PDF (543 K)